68 lines
2.1 KiB
Go
68 lines
2.1 KiB
Go
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package traits
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import "seekia/internal/helpers"
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import "maps"
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import _ "embed"
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import "encoding/gob"
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import "bytes"
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//go:embed rsIDs/GiantHeightStudyLoci.gob
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var GiantHeightStudyLociFile []byte
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func getHeightTraitObject()(Trait, error){
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// Map Structure: rsID -> References Map
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locusReferencesMap := make(map[int64]map[string]string)
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referencesMap_List1 := make(map[string]string)
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referencesMap_List1["GIANT consortium - Meta-analyses of Genome-Wide Association Studies - 2022 - Height"] = "https://portals.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files"
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// These SNPs are taken from the meta-analyses of Genome-Wide Association Studies (GWAS) created by the GIANT consortium
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//https://portals.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files
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// Download link:
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// https://portals.broadinstitute.org/collaboration/giant/images/4/4e/GIANT_HEIGHT_YENGO_2022_GWAS_SUMMARY_STATS_ALL.gz
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//SHA-256 Checksum:
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// db18859724675f2f9ba86eff28cb4dacac0629c0b25c9806a6cf2eed6bb8b71e
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// See /utilities/extractGiantLoci/extractGiantLoci.go to see how they were extracted from the file
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buffer := bytes.NewBuffer(GiantHeightStudyLociFile)
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decoder := gob.NewDecoder(buffer)
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var lociList_1 []int64
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err := decoder.Decode(&lociList_1)
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if (err != nil){ return Trait{}, err }
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for _, rsID := range lociList_1{
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locusReferencesMap[rsID] = maps.Clone(referencesMap_List1)
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}
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heightLociList := helpers.GetListOfMapKeys(locusReferencesMap)
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referencesMap := make(map[string]string)
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referencesMap["GIANT consortium - Meta-analyses of Genome-Wide Association Studies - 2022 - Height"] = "https://portals.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files"
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heightObject := Trait{
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TraitName: "Height",
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TraitDescription: "The distance between the top of a standing person head and the floor.",
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DiscreteOrNumeric: "Numeric",
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LocusReferencesMap: locusReferencesMap,
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LociList: heightLociList,
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LociList_Rules: []int64{},
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RulesList: []TraitRule{},
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OutcomesList: []string{},
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ReferencesMap: referencesMap,
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}
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return heightObject, nil
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}
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