From d538afc7a2e24d3b9bb3ef99ccb4e5554fa1322d Mon Sep 17 00:00:00 2001
From: Simon Sarasova <simonsarasova>
Date: Mon, 5 Aug 2024 21:29:14 +0000
Subject: [PATCH] Added LocusIsPhased information to the local user profile
 creation process.

---
 Changelog.md                                  |  1 +
 Contributors.md                               |  2 +-
 .../myProfileExports/myProfileExports.go      | 55 ++++++++++---------
 3 files changed, 32 insertions(+), 26 deletions(-)

diff --git a/Changelog.md b/Changelog.md
index 57854d7..ff610ad 100644
--- a/Changelog.md
+++ b/Changelog.md
@@ -6,6 +6,7 @@ Small and insignificant changes may not be included in this log.
 
 ## Unversioned Changes
 
+* Added LocusIsPhased information to the local user profile creation process. - *Simon Sarasova*
 * Added the Height trait the traits package. Migrated locus metadata from json encoding to gob encoding. - *Simon Sarasova*
 * Upgraded Fyne to version 2.5.0. - *Simon Sarasova*
 * Added neural network trait prediction to genetic analyses. - *Simon Sarasova*
diff --git a/Contributors.md b/Contributors.md
index 1dac246..6fbd618 100644
--- a/Contributors.md
+++ b/Contributors.md
@@ -9,4 +9,4 @@ Many other people have written code for modules which are imported by Seekia. Th
 
 Name | Date Of First Commit | Number Of Commits
 --- | --- | ---
-Simon Sarasova | June 13, 2023 | 269
\ No newline at end of file
+Simon Sarasova | June 13, 2023 | 270
\ No newline at end of file
diff --git a/internal/profiles/myProfileExports/myProfileExports.go b/internal/profiles/myProfileExports/myProfileExports.go
index c6c6c28..e571261 100644
--- a/internal/profiles/myProfileExports/myProfileExports.go
+++ b/internal/profiles/myProfileExports/myProfileExports.go
@@ -196,7 +196,11 @@ func UpdateMyExportedProfile(myProfileType string, networkType byte)error{
 			}
 
 			polygenicDiseaseObjectsList, err := polygenicDiseases.GetPolygenicDiseaseObjectsList()
-			if (err != nil) { return err }					
+			if (err != nil) { return err }
+
+			// This map stores the rsIDs to share in our profile
+			// We use a map to avoid duplicates
+			myLociToShareMap := make(map[int64]struct{})		
 
 			for _, diseaseObject := range polygenicDiseaseObjectsList{
 
@@ -219,18 +223,7 @@ func UpdateMyExportedProfile(myProfileType string, networkType byte)error{
 
 					locusRSID := locusObject.LocusRSID
 
-					locusValueObject, exists := myGenomeLocusValuesMap[locusRSID]
-					if (exists == true){
-
-						rsIDString := helpers.ConvertInt64ToString(locusRSID)
-
-						locusBase1 := locusValueObject.Base1Value
-						locusBase2 := locusValueObject.Base2Value
-
-						basePairValue := locusBase1 + ";" + locusBase2
-
-						profileMap["LocusValue_rs" + rsIDString] = basePairValue
-					}
+					myLociToShareMap[locusRSID] = struct{}{}
 				}
 			}
 
@@ -256,21 +249,33 @@ func UpdateMyExportedProfile(myProfileType string, networkType byte)error{
 
 				for _, rsID := range lociList{
 
-					locusValueObject, exists := myGenomeLocusValuesMap[rsID]
-					if (exists == true){
-
-						rsIDString := helpers.ConvertInt64ToString(rsID)
-
-						locusBase1 := locusValueObject.Base1Value
-						locusBase2 := locusValueObject.Base2Value
-
-						basePairValue := locusBase1 + ";" + locusBase2
-
-						profileMap["LocusValue_rs" + rsIDString] = basePairValue
-					}
+					myLociToShareMap[rsID] = struct{}{}
 				}
 			}
 
+			for rsID, _ := range myLociToShareMap{
+
+				locusValueObject, exists := myGenomeLocusValuesMap[rsID]
+				if (exists == false){
+					continue
+				}
+
+				rsIDString := helpers.ConvertInt64ToString(rsID)
+
+				locusBase1 := locusValueObject.Base1Value
+				locusBase2 := locusValueObject.Base2Value
+				locusIsPhased := locusValueObject.LocusIsPhased
+
+				basePairValue := locusBase1 + ";" + locusBase2
+				locisIsPhasedString := helpers.ConvertBoolToYesOrNoString(locusIsPhased)
+
+				locusValueAttributeName := "LocusValue_rs" + rsIDString
+				locusIsPhasedAttributeName := "LocusIsPhased_rs" + rsIDString
+
+				profileMap[locusValueAttributeName] = basePairValue
+				profileMap[locusIsPhasedAttributeName] = locisIsPhasedString
+			}
+
 			return nil
 		}